D40251.diff
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	diff --git a/biology/py-pysam/Makefile b/biology/py-pysam/Makefile
	--- a/biology/py-pysam/Makefile
	+++ b/biology/py-pysam/Makefile
	@@ -1,5 +1,6 @@
	PORTNAME= pysam
	DISTVERSION= 0.20.0
	+PORTREVISION= 1
	CATEGORIES= biology python
	MASTER_SITES= PYPI
	PKGNAMEPREFIX= ${PYTHON_PKGNAMEPREFIX}
	@@ -11,12 +12,15 @@
	LICENSE= MIT
	LICENSE_FILE= ${WRKSRC}/COPYING

	+LIB_DEPENDS= libhts.so:biology/htslib
	+
	USES= gmake python:3.6-3.9
	USE_PYTHON= autoplist distutils cython cython_run pytest

	-CFLAGS+= -fPIC # workaround for https://github.com/pysam-developers/pysam/issues/1146
	-
	BINARY_ALIAS= make=${GMAKE}
	+MAKE_ENV= HTSLIB_MODE=external \
	+ HTSLIB_LIBRARY_DIR=${LOCALBASE}/lib \
	+ HTSLIB_INCLUDE_DIR=${LOCALBASE}/include

	post-install:
	@${STRIP_CMD} ${STAGEDIR}${PYTHONPREFIX_SITELIBDIR}/pysam/lib*${PYTHON_EXT_SUFFIX}.so